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S U P P O R T
 

Purification of DNA from Cultured Eukaryotic Cells
(with Proteinase K)

Determine the number of cells. The following protocol is used for 1-2 x 106 cels.

  1. Centrifuge for 5 min at 3000 rpm in a microcentrifuge to collect the cells.
  2. Wash the pellet twice with PBS (137 mM NaCl, 27 mM KCl, 100 mM Na2HPO4, 2 mM K2HPO4, pH 7.4).
  3. Resuspend the pellet in 0.5 ml of lysis buffer (10 mM Tris-HCl (pH 8.5), 5 mM EDTA, 200 mM NaCl, 0.2% SDS). Incubate at 60°C for 5 minutes.
  4. Add 2.5 µl of Proteinase K and 5 µl of RNase A/T1 Mix, mix. Incubate at 60°C for 1 hour.
  5. Add 250 µl of 5 M NaCl, mix incubate on ice for 5 min to precipitate protein.
  6. Centrifuge for 15 min at 10,000 rpm in a microcentrifuge.
  7. Transfer supernatant to a fresh tube. Add a equal volume of isopropanol and mix to precipitate the DNA.
    Optional. Incubate at -20°C for up to 60 min to increase the yield of DNA.
  8. Centrifuge for 10 min at 10,000 rpm in a microcentrifuge.
  9. Discard the supernatant and wash the pellet with 1.2 ml 70% cold ethanol.
  10. Air-dry the pellet*. Dissolve the pellet in water, nuclease-free or TE buffer.

Note

* Do not use a vacuum dryer or let the pellet dry completely. Dried genomic DNA has low solubility.
The typical yield of DNA from 106 cells is 7-15 µg.

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Updated balandžio 02, 2008 08:12